Cold denaturation of a protein dimer monitored at atomic resolution

Nat Chem Biol. 2013 Apr;9(4):264-70. doi: 10.1038/nchembio.1181. Epub 2013 Feb 10.

Abstract

Protein folding and unfolding are crucial for a range of biological phenomena and human diseases. Defining the structural properties of the involved transient species is therefore of prime interest. Using a combination of cold denaturation with NMR spectroscopy, we reveal detailed insight into the unfolding of the homodimeric repressor protein CylR2. Seven three-dimensional structures of CylR2 at temperatures from 25 °C to -16 °C reveal a progressive dissociation of the dimeric protein into a native-like monomeric intermediate followed by transition into a highly dynamic, partially folded state. The core of the partially folded state seems critical for biological function and misfolding.

Publication types

  • Research Support, N.I.H., Intramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Binding Sites
  • Cold Temperature
  • Cytotoxins / chemistry*
  • Cytotoxins / genetics
  • Cytotoxins / metabolism
  • DNA, Bacterial / chemistry*
  • DNA, Bacterial / genetics
  • DNA, Bacterial / metabolism
  • Enterococcus faecalis / genetics
  • Enterococcus faecalis / metabolism*
  • Escherichia coli / genetics
  • Models, Molecular
  • Molecular Conformation
  • Nuclear Magnetic Resonance, Biomolecular
  • Promoter Regions, Genetic
  • Protein Binding
  • Protein Denaturation
  • Protein Folding
  • Protein Multimerization
  • Protein Unfolding
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism

Substances

  • Bacterial Proteins
  • Cytotoxins
  • DNA, Bacterial
  • Recombinant Proteins

Associated data

  • PDB/2LY
  • PDB/2LYJ
  • PDB/2LYK
  • PDB/2LYL
  • PDB/2LYP
  • PDB/2LYQ
  • PDB/2LYS