Expression of miR-486-5p and its significance in lung squamous cell carcinoma

J Cell Biochem. 2019 Aug;120(8):13912-13923. doi: 10.1002/jcb.28665. Epub 2019 Apr 8.

Abstract

Lung squamous cell carcinoma (LUSC) is one of the main histological types of lung cancer with high mortality. The role of microRNA-486-5p in LUSC remains unclear. In the current study, the aim was to explore miR-486-5p expression and its role in LUSC. The miR-486-5p expression was significantly low-expressed in patients with LUSC from The Cancer Genome Atlas database, which was further confirmed in the Gene Expression Omnibus database, patients' tissues, different cell lines by quantitative real-time polymerase chain reaction, and the high-throughput gene sequencing data of lung tissues of mice after a long-term B(a)P exposure. The meta-analysis was performed to evaluate the expression and diagnosis power of miR-486-5p (standard mean difference = -2.25; 95% confidence interval: -3.47 to -1.03; P = 0.0003; area under curve = 0.9082). Functional enrichment analysis revealed the potential function of miR-486-5p in LUSC using gene set enrichment analysis and clusterProfiler package in R software. At last, the hub genes (PTEN, TEK, PIK3R1, PPM1B, SMAD2, and SPTA1) of miR-486-5p were verified. In conclusion, miR-486-5p may be a LUSC antioncogene, playing an important role to serve as a biomarker in LUSC.

Keywords: diagnosis; function; lung squamous cell carcinoma (LUSC); miR-486-5p; prognosis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Carcinoma, Squamous Cell / genetics*
  • Cell Line, Tumor
  • Databases, Genetic
  • Down-Regulation / genetics
  • Gene Expression Regulation, Neoplastic*
  • Genes, Neoplasm
  • Humans
  • Lung Neoplasms / genetics*
  • MicroRNAs / genetics*
  • MicroRNAs / metabolism
  • ROC Curve
  • Reproducibility of Results

Substances

  • MIRN486 microRNA, human
  • MicroRNAs