Locus: ATCG00350
    
Representative Gene Model (?)   
ATCG00350.1
Gene Model Type    protein_coding
Other names:   
PSAA
Description (?)   Encodes psaA protein comprising the reaction center for photosystem I along with psaB protein; hydrophobic protein encoded by the chloroplast genome.
Map Detail Image  

Center on ATCG00350 | Full-screen view
Annotations (?)  
category   relationship type (?)   keyword (?)
GO Biological Process   acts upstream of or within   photosynthesis
GO Cellular Component   located in   chloroplast, chloroplast envelope, chloroplast thylakoid, chloroplast thylakoid membrane, plastid, plastoglobule, thylakoid
GO Cellular Component   part of   photosystem I reaction center
GO Molecular Function   enables   chlorophyll binding, mRNA binding
Growth and Developmental Stages   expressed during   LP.02 two leaves visible stage, LP.04 four leaves visible stage, LP.06 six leaves visible stage, LP.08 eight leaves visible stage, LP.10 ten leaves visible stage, LP.12 twelve leaves visible stage, flowering stage, mature plant embryo stage, petal differentiation and expansion stage, plant embryo bilateral stage, plant embryo cotyledonary stage, plant embryo globular stage, vascular leaf senescent stage
Plant structure   expressed in   carpel, cauline leaf, collective leaf structure, cotyledon, flower, flower pedicel, guard cell, hypocotyl, inflorescence meristem, juvenile vascular leaf, leaf apex, leaf lamina base, petal, petiole, plant embryo, pollen, root, rosette leaf, seed, sepal, shoot apex, shoot system, stamen, stem, vascular leaf
Annotation Detail
Sequence (?)   full length cDNA   full length CDS   full length genomic   protein
RNA Data  
 
Two-channel Arrays  
array element
name (?)		 avg. log ratio
(std. error)		 avg. intensity
(std. error)
H8A12 -0.032 (0.065) 21943.814 (961.643)
H10E5 0.095 (0.064) 20584.746 (945.378)
 
One-channel Arrays  
array element
name (?)		 avg. signal
intensity (std. error)		 avg. signal
percentile (std. error)
245007_AT 3430.430 (79.603) 93.463 (0.325)
12345_AT 1416.367 (89.051) 84.989 (2.333)
 
Associated Transcripts (?)  
type number associated
EST ( 41 )
cDNA ( 1 )
BAR eFP Browser  
Chromosome   chloroplast genomeP
Protein Data (?)  
name   length(aa)   molecular weight   isoelectric point   INTERPRO domains
ATCG00350.1    750    83230.1    7.12    PSI_PsaA/B_CS:IPR020586
                PSI_PsaA/B:IPR001280
                PSI_PsaA:IPR006243
                PSI_PsaA/B_sf:IPR036408
Plant Homologs (?)  
treeviewer phylogenes View complete family and tree
Arabidopsis paralogs (None) (?)
Plant orthologs (?)
Eudicotyledons
Brassica napus 2
Capsicum annuum 9
Erythranthe guttata 1
Glycine max 1
Gossypium hirsutum 1
Helianthus annuus 15
Juglans regia 1
Lactuca sativa 2
Medicago truncatula 3
Nicotiana tabacum 1
Populus trichocarpa 1
Prunus persica 1
Ricinus communis 1
Solanum lycopersicum 1
Solanum tuberosum 2
Spinacia oleracea 1
Vitis vinifera 1
Monocotyledons (None)
  
Other plants
Amborella trichopoda 1
Chlamydomonas reinhardtii 1
Klebsormidium nitens 1
Nelumbo nucifera 1
Physcomitrella patens 1
Selaginella moellendorffii 2
Search Gene Families   
EnsemblPlants    Phytozome
PANTHER    PLAZA
PhyloGenes
Map Locations
(?)		  
chrom map map type (?) coordinates orientation attrib
CP AGI nuc_sequence 39605 - 41857 bp reverse   details
Map Links (?)   MapViewer     Sequence Viewer     GBrowse     JBrowse
Polymorphism (?)
Showing 15 of 50 entries
(see all)		  
name (?)   type (?)   polymorphism site   gene names   allele type (?)
GABI_047E12   insertion   coding_region   ATCG00350.1   unknown
GABI_062D08   insertion   coding_region   ATCG00350.1   unknown
GABI_220D03   insertion   coding_region   ATCG00350.1   unknown
GABI_242B02   insertion   coding_region   ATCG00350.1   unknown
GABI_246A01   insertion   coding_region   ATCG00350.1   unknown
GABI_247B06   insertion   coding_region   ATCG00350.1   unknown
GABI_260D09   insertion   coding_region   ATCG00350.1   unknown
GABI_274C02   insertion   coding_region   ATCG00350.1   unknown
GABI_274C05   insertion   coding_region   ATCG00350.1   unknown
GABI_274D05   insertion   coding_region   ATCG00350.1   unknown
GABI_276B08   insertion   coding_region   ATCG00350.1   unknown
GABI_277F03   insertion   coding_region   ATCG00350.1   unknown
GABI_281F09   insertion   coding_region   ATCG00350.1   unknown
GABI_300B04   insertion   coding_region   ATCG00350.1   unknown
GABI_303G03   insertion   coding_region   ATCG00350.1   unknown
Germplasm
(?)
Showing 3 of 3 entries
  
name   polymorphisms   background   stock name
CS309459   GK-323D08-015947; GK-323D08-015951     CS309459
images
None available  
phenotypes (?)
None available
CS373629   GK-047E12-016076; GK-047E12-016081     CS373629
images
None available  
phenotypes (?)
None available
CS345618   GK-586H04-021754     CS345618
images
None available  
phenotypes (?)
None available
(European Users)
Clones (?)
(showing 3 of 3 entries)
  
Clone Name Aliases GenBank
Accession		 Vector
Type		 Stock Number
H10E5  H10E5T7  plasmid  H10E5
H8A12  H8A12T7  plasmid  H8A12
538201  L36246  L36246
 
External Link (?)   
Epigenomics
  Danforth Center Small RNA/PARE/Methylation
Expression/Localization
  eFP Browser
  Eukaryotic Promoter Database (EPD)
  The Subcellular Location of Proteins in Arabidopsis Database (SUBA)
Genomics
  Gramene
  MIPS
  Thalemine at BAR
Metabolomics
  View Aracyc pathway oxygenic photosynthesis
  View Aracyc pathway photosynthesis light reactions
  View Aracyc reaction RXN490-3650 (1.97.1.12)
Other
  BAR ePlant
  BAR ePlant Molecule View
Polymorphisms/Alleles/Variants
  Salk SNP Viewer
  T-DNA Express
Proteomics
  AlphaFold Protein Structure Database
  AtProteome
  Functional Analysis Tools for Post-Translational Modifications(FAT-PTM)
  Plant Proteome Database
  Plant PTM Viewer
Reagents
  Agrisera (antibody)
  Arabidopsis Biological Resource Center (ABRC) (Seed/DNA)
  PhytoAB (antibody)
  RIKEN BioResource Research Center (Seed/DNA)
Community Comments (?) (shows only the most recent comments by default)
 
     
Publication (?)   
author/title     source     associated loci     date
Wu, J, Chen, S, Wang, C, Lin, W, Huang, C, Fan, C, Han, D, Lu, D, Xu, X, Sui, S, Zhang, L
Regulatory dynamics of higher plant PSI-LHCI supercomplex during state transitions
    MOLECULAR PLANT     AT1G08380  AT1G30380  AT2G05070  AT2G05100  AT3G27690  AT4G12800  ATCG00350      2023
Ji, D, Li, Q, Guo, Y, An, W, Manavski, N, Meurer, J, Chi, W
NADP+ Supply Adjusts the Synthesis of Photosystem I in Arabidopsis Chloroplasts
    PLANT PHYSIOLOGY     AT1G21640  ATCG00340  ATCG00350      2022
Bach-Pages, M, Homma, F, Kourelis, J, Kaschani, F, Mohammed, S, Kaiser, M, van der Hoorn, R A L, Castello, A, Preston, G M
Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method
    BIOMOLECULES     AT1G01080  AT1G01320  AT1G02150  AT1G02780  AT1G02840  AT1G03130  AT1G03457  AT1G04270  AT1G04410  AT1G04480  AT1G04990  AT1G05190  AT1G06190  AT1G06680  AT1G07070  AT1G07210  AT1G07320  AT1G07360  AT1G07920  AT1G07930  more...     2020
Nozoe, M, Tsunoyama, Y, Ishizaki, Y, Nakahira, Y, Shiina, T
Selective activation of chloroplast psbD light-responsive promoter and psaA/B promoter in transplastomic tobacco plants overexpressing Arabidopsis sigma factor AtSIG5
    PROTEIN AND PEPTIDE LETTERS     AT5G24120  ATCG00020  ATCG00270  ATCG00340  ATCG00350      2019
Danilova, M N, Kudryakova, N V, Andreeva, A A, Doroshenko, A S, Pojidaeva, E S, Kusnetsov, V V
Differential impact of heat stress on the expression of chloroplast-encoded genes
    PLANT PHYSIOLOGY AND BIOCHEMISTRY     AT1G56360  AT2G01890  AT2G23070  AT4G26080  AT5G10480  AT5G24120  AT5G57050  ATCG00020  ATCG00190  ATCG00250  ATCG00270  ATCG00330  ATCG00340  ATCG00350  ATCG00490  ATCG00500  ATCG00700  ATCG00740  ATCG01010      2018
Hu, X, Kato, Y, Sumida, A, Tanaka, A, Tanaka, R
The SUFBC2 D Complex is Required for the Biogenesis of All Major Classes of Plastid Fe-S Proteins
    THE PLANT JOURNAL     AT3G24430  ATCG00350      2017
Nath, K, Wessendorf, R L, Lu, Y
A nitrogen-fixing subunit Essential for Accumulating 4Fe-4S-Containing Photosystem I Core Protein
    PLANT PHYSIOLOGY     AT4G25910  ATCG00340  ATCG00350  ATCG01060      2016
McCarthy, A, Chung, M, Ivanov, A G, Krol, M, Inman, M, Maxwell, D P, Hüner, N P
An established Arabidopsis thaliana var. Landsberg erecta cell suspension culture accumulates chlorophyll and exhibits a stay-green phenotype in response to high external sucrose concentrations
    JOURNAL OF PLANT PHYSIOLOGY     AT2G05070  AT3G27690  AT5G13630  AT5G45930  ATCG00350      2016
Lu, C
CORRECTION: PSBP-DOMAIN PROTEIN1, a nuclear-encoded thylakoid lumenal protein, is essential for photosystem I assembly in Arabidopsis
    THE PLANT CELL     AT4G14720  AT4G15510  ATCG00340  ATCG00350      2016
Wang, M, Jiang, L, Da, Q, Liu, J, Feng, D, Wang, J, Wang, H B, Jin, H L
DELAYED GREENING 238, a Nuclear-Encoded Chloroplast Nucleoid Protein, Is Involved in the Regulation of Early Chloroplast Development and Plastid Gene Expression in Arabidopsis thaliana
    PLANT AND CELL PHYSIOLOGY     AT2G20260  AT3G12930  AT3G16140  AT3G50820  AT3G54090  ATCG00020  ATCG00070  ATCG00190  ATCG00350  ATCG00490  ATCG00500  ATCG00670  ATCG00740  ATCG00890      2016
Järvi, S, Suorsa, M, Tadini, L, Ivanauskaite, A, Rantala, S, Allahverdiyeva, Y, Leister, D, Aro, E M
FtsH facilitates proper biosynthesis of photosystem I in Arabidopsis thaliana
    PLANT PHYSIOLOGY     AT2G30950  AT5G42270  ATCG00350      2016
Manavski, N, Torabi, S, Lezhneva, L, Arif, M A, Frank, W, Meurer, J
HIGH CHLOROPHYLL FLUORESCENCE145 Binds to and Stabilizes the psaA 5' UTR via a Newly Defined Repeat Motif in Embryophyta
    THE PLANT CELL     AT5G08720  ATCG00350  HCF145      2015
Schenck, C A, Nadella, V, Clay, S L, Lindner, J, Abrams, Z, Wyatt, S E
A proteomics approach identifies novel proteins involved in gravitropic signal transduction
    AMERICAN JOURNAL OF BOTANY     AT1G03130  AT1G07930  AT1G09340  AT1G11860  AT1G22410  AT1G23310  AT1G30120  AT1G32060  AT1G33120  AT1G35720  AT1G42970  AT1G43170  AT1G55490  AT1G57860  AT1G72150  AT1G76180  AT1G78370  AT1G78900  AT2G06850  AT2G20420  more...     2013
Ueda, M, Takami, T, Peng, L, Ishizaki, K, Kohchi, T, Shikanai, T, Nishimura, Y
Subfunctionalization of Sigma Factors during the Evolution of Land Plants Based on Mutant Analysis of Liverwort (Marchantia polymorpha L.) MpSIG1
    GENOME BIOLOGY AND EVOLUTION     ATCG00070  ATCG00350  ATCG00580  ATCG00680      2013
View Complete List   (15 of 31 displayed)
Date last modified    2020-05-16
TAIR Accession    Locus:504954659